Publications and citations
Kupka, S., "Molecular dynamics on graphics accelerators". Central European Seminar on Computer Graphics for Students 2006, 2006 (PDF)
- J. E. Stone, J. C. Phillips, P. L. Freddolino, D.J. Hardy, L.G. Trabuco, K. Schulten: Accelerating molecular modeling applications with graphics processors. JOURNAL OF COMPUTATIONAL CHEMISTRY Volume: 28 Issue: 16 Pages: 2618-2640 Published: DEC 2007
- J. A. Anderson, C. D. Lorenz, A. Travesset: General purpose molecular dynamics simulations fully implemented on graphics processing units. JOURNAL OF COMPUTATIONAL PHYSICS Volume: 227 Issue: 10 Pages: 5342-5359 Published: MAY 1 2008
- M. Stock and A. Gharakhani, Toward efficient GPU-accelerated N-body simulations, 46th AIAA Aerospace Sciences Meeting, 7-10 January 2008, Reno, NV (PDF)
- Richmond, Paul, Walker, Dawn, Coakley, Simon, Romano, Daniela: High performance cellular level agent-based simulation with FLAME for the GPU. BRIEFINGS IN BIOINFORMATICS Volume: 11 Issue: 3 Pages: 334-347 Published: MAY 2010.
- Slawomir Walkowiak, Konrad Wawruch, Marita Nowotka, Lukasz Ligowski and Witold Rudnicki: Exploring utilisation of GPU for database applications. Procedia Computer Science Volume 1, Issue 1, May 2010, Pages 505-513 ICCS 2010
- GHAREHCHOPOGHA, F.. A Survey of Simulation on Re-configurable Computers. AWERProcedia Information Technology and Computer Science, North America, 2, dec. 2012. Available at: http://www.world-education-center.org/index.php/P-ITCS/article/view/672/298.
- Novalbos, Gonzalez, Otaduy, Lopez-Medrano, Sanchez: On-Board Multi-GPU Molecular Dynamics. Euro-Par 2013 Parallel Processing, Lecture Notes in Computer Science Volume 8097, 2013, pp 862-873 http://dx.doi.org/10.1007/978-3-642-40047-6_85
M. Kupková, S. Kupka: "Brittle intergranular failure in grain aggregates. A computer simulation of the graphics processing unit". Key Engineering Materials Vol. 409 (2009) pp.386-389. doi:10.4028/www.scientific.net/KEM.409.386
S. Kupka: "Použitie genetických algoritmov pri optimalizácii rozloženia spevňujúcich prvkov v kompozitných materiáloch". Kognice a umělý život (2010), pp. 203-206, ISBN 978-80-7248-589-5